Single volume
linc_convert.modalities.lsm.single_volume ¶
Converts TIFF to OME-Zarr or NIfTI-Zarr.
convert ¶
convert(inp, *, voxel_size=(1, 1, 1), general_config=None, zarr_config=None, nii_config=None)
Tiff to OME-Zarr.
Convert tiff files into a pyramidal OME-ZARR (or NIfTI-Zarr) hierarchy.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
inp
|
str
|
Path to the input tiff file |
required |
voxel_size
|
list[float]
|
Voxel size along the X, Y and Z dimensions, in microns. |
(1, 1, 1)
|
general_config
|
GeneralConfig
|
General configuration |
None
|
zarr_config
|
ZarrConfig
|
Zarr related configuration |
None
|
nii_config
|
NiftiConfig
|
NIfTI header related configuration |
None
|