Prd
linc_convert.modalities.lsm.prd ¶
Convert Kinetix .prd image(s) to OME-Zarr/NIfTI-Zarr.
A .prd file is a stack of uint16 frames with a fixed header
and inter-frame gap, and padding at the end. The input is a directory of
ss_stack_*.prd files, which are concatenated along the acquisition order.
Example input files can be found at https://dandiarchive.org/dandiset/001769/draft/files?location=rawdata/HG9_Z1_Y1
convert ¶
convert(inp, *, voxel_size=(1, 1, 1), general_config=None, zarr_config=None, nii_config=None)
Convert Kinetix .prd file(s) into a pyramidal OME-Zarr or NIfTI-Zarr.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
inp
|
str
|
Path to a directory of ss_stack_*.prd files. |
required |
voxel_size
|
list[float]
|
Voxel size along the X, Y and Z dimensions, in microns. |
(1, 1, 1)
|
general_config
|
GeneralConfig | None
|
General configuration |
None
|
zarr_config
|
ZarrConfig | None
|
Zarr related configuration |
None
|
nii_config
|
NiftiConfig | None
|
NIfTI header related configuration |
None
|