Single volume
linc_convert.modalities.psoct.single_volume ¶
Matlab to OME-Zarr.
Converts Matlab files generated by the MGH in-house OCT pipeline into a OME-ZARR pyramid.
convert ¶
convert(inp, *, key=None, meta=None, general_config=None, zarr_config=None, nii_config=None)
Matlab to OME-Zarr.
Convert OCT volumes in raw matlab files into a pyramidal OME-ZARR (or NIfTI-Zarr) hierarchy.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
inp
|
str
|
Path to the input mat file |
required |
key
|
Optional[str]
|
Key of the array to be extracted, default to first key found |
None
|
meta
|
str
|
Path to the metadata file |
None
|
general_config
|
GeneralConfig
|
General configuration |
None
|
zarr_config
|
ZarrConfig
|
Zarr related configuration |
None
|
nii_config
|
NiftiConfig
|
NIfTI header related configuration |
None
|